Web Based Exploration of Brain Atlases and Data Collections
BrainBaseWeb is the primary user interface to efficiently browse, retrieve and Visualize 3D images registered to a standard brain template (e.g. confocal microscopy data) and annotated anatomical structures from BrainBase. BrainBaseWeb provides several task-centred semantic and interactive query options:
- Query functionality
- Semantic Queries: Full Text Semantic Queries
- Hierarchical Anatomy Browser
- Anatomical Queries: Search by staining profile in neuropils
- Spatial High Staining Queries: Draw an arbitrary Region of Interest and retrieve images with high or similar staining or structure.
- The "Advanced Search" realizes a set of specialized query interfaces, like neuron similarity search, advanced image staining profile search *)
- BrainBase Query Language (BQL) using a controlled vocabulary *)
- Advanced web based visualization
- Automatically generated 2D previews
- 2D slice views, different multi planar reformation layouts
- Fully web-based multi-channel 3D volume rendering and mixed geometry-volume rendering
- Heatmap generation of arborization overlaps. *)
- Data export
- Export Data in .tsv and .csv format
- Workspace to collect data during your session and to export it in Excel format. *)
- Reproducible ans shareable query results: Shareable links with persistent status of the web interface
*) only available in BrainBaseWeb 1.0